GnpIS: an information system to integrate genetic and genomic data from plants and fungi - INRAE - Institut national de recherche pour l’agriculture, l’alimentation et l’environnement Access content directly
Journal Articles Database - The journal of Biological Databases and Curation Year : 2013

GnpIS: an information system to integrate genetic and genomic data from plants and fungi

Michael M. Alaux
Aminah A. Keliet
Erik Kimmel
  • Function : Author
  • PersonId : 1203744
Nicolas Lapalu
Célia Michotey
Nacer Mohellibi
Cyril Pommier
Hadi Quesneville

Abstract

Data integration is a key challenge for modern bioinformatics. It aims to provide biologists with tools to explore relevant data produced by different studies. Large-scale international projects can generate lots of heterogeneous and unrelated data. The challenge is to integrate this information with other publicly available data. Nucleotide sequencing throughput has been improved with new technologies; this increases the need for powerful information systems able to store, manage and explore data. GnpIS is a multispecies integrative information system dedicated to plant and fungi pests. It bridges genetic and genomic data, allowing researchers access to both genetic information (e.g. genetic maps, quantitative trait loci, markers, single nucleotide polymorphisms, germplasms and genotypes) and genomic data (e.g. genomic sequences, physical maps, genome annotation and expression data) for species of agronomical interest. GnpIS is used by both large international projects and plant science departments at the French National Institute for Agricultural Research. Here, we illustrate its use. Database URL: http://urgi.versailles.inra.fr/gnpis.
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Dates and versions

hal-02648084 , version 1 (29-05-2020)

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Delphine D. Steinbach, Michael M. Alaux, Joelle J. Amselem, Nathalie Choisne, Sophie S. Durand, et al.. GnpIS: an information system to integrate genetic and genomic data from plants and fungi. Database - The journal of Biological Databases and Curation, 2013, 2013, pp.1-9. ⟨10.1093/database/bat058⟩. ⟨hal-02648084⟩
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