Skip to Main content Skip to Navigation
Journal articles

Temporal representation for gene networks: towards a qualitative temporal data mining

Abstract : Processing literature (i.e., text corpora) to capture gene regulation events is not easy and can be driven by the final data representation. We propose to build, manually, an example of temporal representation (whole gene networks for coat formation in Bacillus Subtilis). Our temporal representation is based on a generalised formal language theory (S-languages). We propose an algorithm to link bags of relations with representation, by ordering interactions. In this paper, starting from the network made manually from text data, we show that S-languages are quite relevant to encapsulate gene properties, and infer knowledge across time-stamped gene relations found in texts.
Document type :
Journal articles
Complete list of metadata

https://hal.inrae.fr/hal-02654451
Contributor : Migration Prodinra Connect in order to contact the contributor
Submitted on : Friday, May 29, 2020 - 9:37:52 PM
Last modification on : Friday, October 15, 2021 - 10:56:03 AM

Identifiers

Collections

Citation

Nicolas Turenne, S.R. Schwer. Temporal representation for gene networks: towards a qualitative temporal data mining. International Journal of Data Mining and Bioinformatics, Inderscience, 2008, 2 (1), pp.36-53. ⟨hal-02654451⟩

Share

Metrics

Record views

18