The acacia gum arabinogalactan fraction is a thin oblate ellipsoid: A new model based on small-angle neutron scattering and ab initio calculation - INRAE - Institut national de recherche pour l’agriculture, l’alimentation et l’environnement
Article Dans Une Revue Biophysical Journal Année : 2008

The acacia gum arabinogalactan fraction is a thin oblate ellipsoid: A new model based on small-angle neutron scattering and ab initio calculation

Résumé

Acacia gum is a branched complex polysaccharide whose main chain consists of 1,3-linked beta-D-galactopyranosyl units. Acacia gum is defined as a heteropolysaccharide since it contains similar to 2% of a polypeptide. The major molecular fraction (F1) accounting for similar to 88% of the total acacia gum mass is an arabinogalactan peptide with a weight-average molecular weight of 2.86 x 10(5) g/mol. The molecular structure of F1 is actually unknown. From small angle neutron scattering experiments in charge screening conditions, F1 appeared to be a dispersion of two-dimensional structures with a radius of gyration of similar to 6.5 nm and an inner dense branched structure. Inverse Fourier transform of F1 scattering form factor revealed a disk-like morphology with a diameter of 20 nm and a thickness below 2 nm. Ab initio calculations on the pair distance distribution function produced a porous oblate ellipsoid particle with a central intricated "network". Both transmission electron microscopy and atomic force microscopy confirm the thin disk model and structural dimensions. The model proposed is a breakthrough in the field of arabinogalactan-protein-type macromolecules. In particular, concerning the site of biosynthesis of these macromolecules, the structural dimensions found in this study would be in agreement with a phloem-mediated long-distance transport. In addition, the structure of F1 could also explain the low viscosity of acacia gum solutions, and its ability to self-assemble and to interact with proteins.

Dates et versions

hal-02668236 , version 1 (31-05-2020)

Identifiants

Citer

C. Schmitt, E. Kolodziejczyk, A. Lapp, Cedric Gaillard, Denis Renard, et al.. The acacia gum arabinogalactan fraction is a thin oblate ellipsoid: A new model based on small-angle neutron scattering and ab initio calculation. Biophysical Journal, 2008, 94 (2), pp.629-639. ⟨10.1529/biophysj.107.109124⟩. ⟨hal-02668236⟩
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