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CAR(H)(T)AGene: multipopulation integrated genetic and radiation hybrid mapping

Abstract : CarthaGene: is an integrated genetic and radiation hybrid (RH) mapping tool which can deal with multiple populations, including mixtures of genetic and RH data. CarthaGene: performs multipoint maximum likelihood estimations with accelerated expectation– maximization algorithms for some pedigrees and has sophisticated algorithms for marker ordering. Dedicated heuristics for framework mapping are also included. Carth aGene: can be used as a C++ library, through a shell command and a graphical interface. The XML output for companion tools is integrated.
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https://hal.inrae.fr/hal-02682633
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Submitted on : Monday, June 1, 2020 - 1:31:58 AM
Last modification on : Tuesday, October 19, 2021 - 2:24:22 PM

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Simon de Givry, Martin Bouchez, Patrick Chabrier, Denis Milan, Thomas Schiex. CAR(H)(T)AGene: multipopulation integrated genetic and radiation hybrid mapping. Bioinformatics, Oxford University Press (OUP), 2005, 21 (5), pp.1703-1704. ⟨10.1093/bioinformatics/bti222⟩. ⟨hal-02682633⟩

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