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REPET v3.0

Abstract : The REPET package integrates bioinformatics pipelines dedicated to detecte, annotate and analyse transposable elements (TEs) in genomic sequences. The main pipelines are (i) TEdenovo, which search for interspersed repeats, build consensus sequences and classify them according to TE features, and (ii) TEannot, which mines a genome with a library of TE sequences, for instance the one produced by the TEdenovo pipeline, to provide TE annotations exported into GFF3 files.
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https://hal.inrae.fr/hal-02790461
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Submitted on : Friday, June 5, 2020 - 6:26:32 AM
Last modification on : Tuesday, November 9, 2021 - 11:10:02 AM

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Veronique Jamilloux, Françoise Alfama-Depauw, Johann Confais, Mariène Wan, Agnes Baud, et al.. REPET v3.0. 2019. ⟨hal-02790461⟩

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