Bacterial hppd: a biomarker of exposure of soils to beta-triketone herbicides?
Résumé
β-triketone herbicides are among the most used herbicides in corn crop to control broadleaf weeds.
These herbicides inhibit the 4-hydroxyphenylpyruvate dioxygenase (4-HPPD) and lead to bleaching and
death of weeds. This enzyme is not only found in plants but in all living organisms, including
microorganisms where it takes part to the tyrosine degradation pathway. Thus, microorganisms
classified as “non-target organisms” by current EU regulation for pesticide authorization, might be
impacted by β-triketones, with possible domino effect on microbial functions supporting soil
ecosystem services (Thiour-Mauprivez et al. 2019). Since microorganisms have been proposed by EFSA
as key-drivers to be monitored to better protect soil ecosystem services, we tested the hypothesis that
hppd bacterial community can constitute a biomarker of exposure to β-triketones. Within this context,
we developed a toolbox to monitor the abundance, the diversity and the activity of the hppd bacterial
community.
Abundance and diversity of hppd bacterial community were tested in a lab-to-field experimental
design following the tiered-approach recommended by EFSA to conduct pesticide environmental risk
assessment (ERA). Under lab conditions, soil microcosms not exposed (control) or exposed to x1 or x10
times the agronomical dose of sulcotrione (active ingredient) or Decano® (one of the commercial
formulation of sulcotrione) were studied. Under field conditions, samples were collected in corn crop
exposed to β-triketones or not (control). Analytical chemistry was applied to all samples to study the
dissipation of β-triketone, search for residues and estimate the scenario of exposure of soil
microorganisms. Nucleic acids (DNA/RNA) were extracted from soil samples. Home-made degenerated
primers, specific to the hppd gene of soil bacteria, allowed us to measure the abundance (quantitative
PCR), the composition (α-diversity) and the diversity (β-diversity) (NGS) of the hppd bacterial
community (Thiour-Mauprivez et al. 2020). Finally, the inhibition of the activity of the 4-HPPD was
assessed on pure bacterial strains under wet lab conditions to measure EC50 of β-triketones.
Our poster will be presented to the audience with the aim to identify the better proxy of the hppd
bacterial community that could be used as a biomarker to reflect the exposure of soil microbial
community to β-triketone residues. As a perspective my work might be extended to other pesticides
targeting other enzymes that are also present in so call non-target organisms such as sulfonylureas
inhibiting acetohydroxy acid synthase (AHAS).