In south-western France, sunflowers are usually grown in short rotations and after a long fallow period during which soils are left bare. This practice can favour diseases, caused by soilborne fungi, such as sunflower verticillium wilt (SVW), as well as nitrate leaching, both of which can decrease yields. Growing cover crops during a fallow period is an agroecological practice that could provide ecosystem services and mitigate SVW. A Brassicaceae cover crop that causes biofumigation produces glucosinolates and liberate biocidal compounds that might regulate SVW biologically. Moreover, the green manure effect of the Fabaceae might increase soil mineral nitrogen (SMN). To go further, mixtures of Brassicaceae and Fabaceae might mutualise the benefits that each cover crop has in sole crops. A four-year field study in south-western France tested Brassicaceae (brown mustard, turnip rape and fodder radish) and Fabaceae (purple vetch) in sole crops or a mixture with two or three species during the fallow period, followed by biofumigation, and sunflower crop. The cover crops were characterised, SMN was measured, the SVW and yield were assessed and compared to those of the crop grown on soils left bare during the fallow period. Purple vetch as a sole crop cover crop significantly increased SMN before sunflower sowing but only in 2019. Fodder radish as a sole crop reduced SVW severity significantly, overall, 80 days after sowing, except in 2019, when weather conditions were unfavourable to biofumigation. Purple vetch as a sole crop also reduced significantly SVW severity in 2017 and 2020. Finally, sunflower yields after cover crops were higher than those after bare soils, only after purple vetch as a sole crop in 2020, with a mean increase of 0.77 t ha−1. Mixtures of Brassicaceae and Fabaceae sowed at these densities resulted in an intermediate SMN level between those in sole crops and the bare soil and they did not significantly decrease SVW or increase yields. Our results suggest that cover crops, especially fodder radish or purple vetch, and biofumigation can provide ecosystem services for sunflower, instead of leaving soils bare during the fallow period. However, the extent of ecosystem services is markedly affected by soil and climatic conditions as well as other management practices.