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Article Dans Une Revue Open Forum Infectious Diseases Année : 2022

Identification of Streptomyces spp. in a Clinical Sample: Always Contamination? Results of a French Retrospective Study

Emmanuelle Gras
  • Fonction : Auteur
Mathilde Puges
  • Fonction : Auteur
Maïlys Ducours
  • Fonction : Auteur
Charlotte Leleux
  • Fonction : Auteur
Lucie Amoureux
Baptiste Jean
  • Fonction : Auteur
Imane Bendjelloul
  • Fonction : Auteur
François Camelena
  • Fonction : Auteur
Rachel Chenouard
  • Fonction : Auteur
Rafael Mahieu
Olivier Lemenand
  • Fonction : Auteur
Alexandre Toro
  • Fonction : Auteur
Alain Lecoustumier
  • Fonction : Auteur
Olivier Lortholary
  • Fonction : Auteur
Véronica Rodriguez Nava
  • Fonction : Auteur
David Lebeaux

Résumé

Abstract Background Streptomyces are environmental gram-positive bacilli that can cause ubiquitous mycetoma and, more rarely, invasive infections. We describe the clinical relevance of Streptomyces spp. identified in human samples and characteristics of patients with invasive Streptomyces infections. Methods We conducted a retrospective (2006–2017) study of Streptomyces isolates identified in clinical samples in French microbiology laboratories. Streptomyces genus was confirmed by a specific 16S rRNA polymerase chain reaction, and antibiotic susceptibility testing was performed by disk diffusion and trimethoprim-sulfamethoxazole minimum inhibitory concentration (E-test) if resistance was suspected. Patient characteristics, treatments, and outcomes were collected. Invasive infection was defined as a positive culture from a sterile site with signs of infection but without cutaneous inoculation. Results Of 137 Streptomyces isolates, all were susceptible to amikacin (113/113) and linezolid (112/112), and 92.9% to imipenem (105/113). Using disk diffusion, 50.9% (57/112) of isolates were susceptible to trimethoprim-sulfamethoxazole, but most of the apparently resistant isolates (25/36, 69.4%) tested by E-test were ultimately classified as susceptible. Clinical data were obtained for 63/137 (45.9%) isolates: 30 (47.6%) invasive infections, 8 (12.7%) primary cutaneous infections, 22 (34.9%) contaminations, 3 (4.7%) respiratory colonization. Patients with invasive infection were more frequently receiving corticosteroids than patients without invasive infection (11/30, 36.7%, vs 2/25, 8.0%; P = .03), and at 6-month follow-up, 14 of them were cured, 3 had relapsed, 4 were dead, and 9 were lost to follow-up. Conclusions Half of the clinical samples that grew Streptomyces were from patients with invasive infection. In that case, antimicrobial therapy should include 1 or 2 antibiotics among linezolid, amikacin, or imipenem.

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Immunologie
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hal-04030436 , version 1 (15-03-2023)

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Emmanuelle Gras, Emmanuelle Bergeron, Mathilde Puges, Maïlys Ducours, Charlotte Leleux, et al.. Identification of Streptomyces spp. in a Clinical Sample: Always Contamination? Results of a French Retrospective Study. Open Forum Infectious Diseases, 2022, 9 (7), pp.ofac271. ⟨10.1093/ofid/ofac271⟩. ⟨hal-04030436⟩
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