The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update
Enis Afgan
,
Anton Nekrutenko
,
Bjórn Grüning
,
Daniel Blankenberg
,
Jeremy Goecks
,
Michael Schatz
,
Alexander Ostrovsky
,
Alexandru Mahmoud
,
Andrew Lonie
,
Anna Syme
,
Anne Fouilloux
,
Anthony Bretaudeau
(1)
,
Anton Nekrutenko
,
Anup Kumar
,
Arthur Eschenlauer
,
Assunta Desanto
,
Aysam Guerler
,
Beatriz Serrano-Solano
,
Bérénice Batut
,
Björn Grüning
,
Bradley Langhorst
,
Bridget Carr
,
Bryan Raubenolt
,
Cameron Hyde
,
Catherine Bromhead
,
Christopher Barnett
,
Coline Royaux
,
Cristóbal Gallardo
,
Daniel Blankenberg
,
Daniel Fornika
,
Dannon Baker
,
Dave Bouvier
,
Dave Clements
,
David de Lima Morais
,
David Lopez Tabernero
,
Delphine Lariviere
,
Engy Nasr
,
Enis Afgan
,
Federico Zambelli
,
Florian Heyl
,
Fotis Psomopoulos
,
Frederik Coppens
,
Gareth Price
,
Gianmauro Cuccuru
,
Gildas Le Corguillé
,
Greg von Kuster
,
Gulsum Gudukbay Akbulut
,
Helena Rasche
,
Hans-Rudolf Hotz
,
Ignacio Eguinoa
,
Igor Makunin
,
Isuru Ranawaka
,
James Taylor
,
Jayadev Joshi
,
Jennifer Hillman-Jackson
,
Jeremy Goecks
,
John Chilton
,
Kaivan Kamali
,
Keith Suderman
,
Krzysztof Poterlowicz
,
Yvan Le Bras
,
Lucille Lopez-Delisle
,
Luke Sargent
,
Madeline Bassetti
,
Marco Antonio Tangaro
,
Marius van den Beek
,
Martin Čech
,
Matthias Bernt
,
Matthias Fahrner
,
Mehmet Tekman
,
Melanie Föll
,
Mélanie Pétéra
(2)
,
Michael Schatz
,
Michael Crusoe
,
Miguel Roncoroni
,
Natalie Kucher
,
Nate Coraor
,
Nicholas Stoler
,
Nick Rhodes
,
Nicola Soranzo
,
Niko Pinter
,
Nuwan Goonasekera
,
Pablo Moreno
,
Pavankumar Videm
,
Pietro Mandreoli
,
Pratik Jagtap
,
Qiang Gu
,
Ralf Weber
,
Ross Lazarus
,
Ruben Vorderman
,
Saskia Hiltemann
,
Sergey Golitsynskiy
,
Shilpa Garg
,
Simon Bray
,
Simon Gladman
,
Simone Leo
,
Subina Mehta
,
Timothy Griffin
,
Vahid Jalili
,
Vandenbrouck Yves
,
Victor Wen
,
Vijay Nagampalli
,
Wendi Bacon
,
Willem de Koning
,
Wolfgang Maier
,
Peter Briggs
Enis Afgan
- Function : Author
Anton Nekrutenko
- Function : Author
Bjórn Grüning
- Function : Author
Daniel Blankenberg
- Function : Author
Jeremy Goecks
- Function : Author
Michael Schatz
- Function : Author
Alexander Ostrovsky
- Function : Author
Alexandru Mahmoud
- Function : Author
Andrew Lonie
- Function : Author
Anna Syme
- Function : Author
Anne Fouilloux
- Function : Author
Anton Nekrutenko
- Function : Author
Anup Kumar
- Function : Author
Arthur Eschenlauer
- Function : Author
Assunta Desanto
- Function : Author
Aysam Guerler
- Function : Author
Beatriz Serrano-Solano
- Function : Author
Bérénice Batut
- Function : Author
Björn Grüning
- Function : Author
Bradley Langhorst
- Function : Author
Bridget Carr
- Function : Author
Bryan Raubenolt
- Function : Author
Cameron Hyde
- Function : Author
Catherine Bromhead
- Function : Author
Christopher Barnett
- Function : Author
Coline Royaux
- Function : Author
Cristóbal Gallardo
- Function : Author
Daniel Blankenberg
- Function : Author
Daniel Fornika
- Function : Author
Dannon Baker
- Function : Author
Dave Bouvier
- Function : Author
Dave Clements
- Function : Author
David de Lima Morais
- Function : Author
David Lopez Tabernero
- Function : Author
Delphine Lariviere
- Function : Author
Engy Nasr
- Function : Author
Enis Afgan
- Function : Author
Federico Zambelli
- Function : Author
Florian Heyl
- Function : Author
Fotis Psomopoulos
- Function : Author
Frederik Coppens
- Function : Author
Gareth Price
- Function : Author
Gianmauro Cuccuru
- Function : Author
Gildas Le Corguillé
- Function : Author
Greg von Kuster
- Function : Author
Gulsum Gudukbay Akbulut
- Function : Author
Helena Rasche
- Function : Author
Hans-Rudolf Hotz
- Function : Author
Ignacio Eguinoa
- Function : Author
Igor Makunin
- Function : Author
Isuru Ranawaka
- Function : Author
James Taylor
- Function : Author
Jayadev Joshi
- Function : Author
Jennifer Hillman-Jackson
- Function : Author
Jeremy Goecks
- Function : Author
John Chilton
- Function : Author
Kaivan Kamali
- Function : Author
Keith Suderman
- Function : Author
Krzysztof Poterlowicz
- Function : Author
Yvan Le Bras
- Function : Author
- PersonId : 184303
- IdHAL : yvan-le-bras
- ORCID : 0000-0002-8504-068X
- IdRef : 150878001
Lucille Lopez-Delisle
- Function : Author
Luke Sargent
- Function : Author
Madeline Bassetti
- Function : Author
Marco Antonio Tangaro
- Function : Author
Marius van den Beek
- Function : Author
Martin Čech
- Function : Author
Matthias Bernt
- Function : Author
Matthias Fahrner
- Function : Author
Mehmet Tekman
- Function : Author
Melanie Föll
- Function : Author
Mélanie Pétéra
- Function : Author
- PersonId : 742819
- IdHAL : melanie-petera
Michael Schatz
- Function : Author
Michael Crusoe
- Function : Author
Miguel Roncoroni
- Function : Author
Natalie Kucher
- Function : Author
Nate Coraor
- Function : Author
Nicholas Stoler
- Function : Author
Nick Rhodes
- Function : Author
Nicola Soranzo
- Function : Author
Niko Pinter
- Function : Author
Nuwan Goonasekera
- Function : Author
Pablo Moreno
- Function : Author
Pavankumar Videm
- Function : Author
Pietro Mandreoli
- Function : Author
Pratik Jagtap
- Function : Author
Qiang Gu
- Function : Author
Ralf Weber
- Function : Author
Ross Lazarus
- Function : Author
Ruben Vorderman
- Function : Author
Saskia Hiltemann
- Function : Author
Sergey Golitsynskiy
- Function : Author
Shilpa Garg
- Function : Author
Simon Bray
- Function : Author
Simon Gladman
- Function : Author
Simone Leo
- Function : Author
Subina Mehta
- Function : Author
Timothy Griffin
- Function : Author
Vahid Jalili
- Function : Author
Vandenbrouck Yves
- Function : Author
Victor Wen
- Function : Author
Vijay Nagampalli
- Function : Author
Wendi Bacon
- Function : Author
Willem de Koning
- Function : Author
Wolfgang Maier
- Function : Author
Peter Briggs
- Function : Author
Abstract
Abstract Galaxy is a mature, browser accessible workbench for scientific computing. It enables scientists to share, analyze and visualize their own data, with minimal technical impediments. A thriving global community continues to use, maintain and contribute to the project, with support from multiple national infrastructure providers that enable freely accessible analysis and training services. The Galaxy Training Network supports free, self-directed, virtual training with >230 integrated tutorials. Project engagement metrics have continued to grow over the last 2 years, including source code contributions, publications, software packages wrapped as tools, registered users and their daily analysis jobs, and new independent specialized servers. Key Galaxy technical developments include an improved user interface for launching large-scale analyses with many files, interactive tools for exploratory data analysis, and a complete suite of machine learning tools. Important scientific developments enabled by Galaxy include Vertebrate Genome Project (VGP) assembly workflows and global SARS-CoV-2 collaborations.
Domains
Biochemistry, Molecular BiologyOrigin | Publisher files allowed on an open archive |
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Licence |