Evolution of T cell receptor beta loci in salmonids - INRAE - Institut national de recherche pour l’agriculture, l’alimentation et l’environnement
Article Dans Une Revue Frontiers in Immunology Année : 2023

Evolution of T cell receptor beta loci in salmonids

Résumé

T-cell mediated immunity relies on a vast array of antigen specific T cell receptors (TR). Characterizing the structure of TR loci is essential to study the diversity and composition of T cell responses in vertebrate species. The lack of good-quality genome assemblies, and the difficulty to perform a reliably mapping of multiple highly similar TR sequences, have hindered the study of these loci in non-model organisms. High-quality genome assemblies are now available for the two main genera of Salmonids, Salmo and Oncorhynchus . We present here a full description and annotation of the TRB loci located on chromosomes 19 and 25 of rainbow trout ( Oncorhynchus mykiss ). To get insight about variations of the structure and composition of TRB locus across salmonids, we compared rainbow trout TRB loci with other salmonid species and confirmed that the basic structure of salmonid TRB locus is a double set of two TRBV-D-J-C loci in opposite orientation on two different chromosomes. Our data shed light on the evolution of TRB loci in Salmonids after their whole genome duplication (WGD). We established a coherent nomenclature of salmonid TRB loci based on comprehensive annotation. Our work provides a fundamental basis for monitoring salmonid T cell responses by TRB repertoire sequencing.
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Dates et versions

hal-04280847 , version 1 (11-11-2023)
hal-04280847 , version 2 (11-07-2024)

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Pierre Boudinot, Samuel Novas, Luc Jouneau, Stanislas Mondot, Marie-Paule Lefranc, et al.. Evolution of T cell receptor beta loci in salmonids. Frontiers in Immunology, 2023, 14, pp.1238321. ⟨10.3389/fimmu.2023.1238321⟩. ⟨hal-04280847v1⟩
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