A computational architecture designed for genome annotation: oak genome sequencing project as a use case - INRAE - Institut national de recherche pour l’agriculture, l’alimentation et l’environnement Access content directly
Conference Poster Year : 2015

A computational architecture designed for genome annotation: oak genome sequencing project as a use case

Abstract

The ANR Genoak project aims to study the two key evolutionary processes that explain the remarkable diversity found within the oak genus. We performed an automated structural annotation (transposable elements (TEs) and genes) and functional annotation of predicted genes using robust pipelines i/ REPET for TEs ii/ Eugene for gene prediction iii/ FunAnnotPipe (in-house pipeline) mainly based on InterproScan for functional annotation. Further objectives were to: i/ integrate the whole genome with all the features annotated into a Genome Browser, ii/ provide an interface for gene prediction curation/validation, and iii/ provide an information system pointing towards accessibility and interoperability.
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Dates and versions

hal-01246649 , version 1 (05-06-2020)

Identifiers

  • HAL Id : hal-01246649 , version 1
  • PRODINRA : 335372

Cite

Nicolas Francillonne, Tina Alaeitabar, Françoise Alfama-Depauw, Loïc Couderc, Claire Guerche, et al.. A computational architecture designed for genome annotation: oak genome sequencing project as a use case. JOBIM 2015 - Journées Ouvertes Biologie Informatique Mathématiques, Jul 2015, Clermont-ferrand, France. 2015. ⟨hal-01246649⟩
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