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FrameDP: sensitive peptide detection on noisy matured sequences
Abstract : Transcriptome sequencing represents a fundamental source of information for genome-wide studies and transcriptome analysis and will become increasingly important for expression analysis as new sequencing technologies takes over array technology. The identification of the protein-coding region in transcript sequences is a prerequisite for systematic amino acid-level analysis and more specifically for domain identification. In this article, we present FrameDP, a self-training integrative pipeline for predicting CDS in transcripts which can adapt itself to different levels of sequence qualities.
Keywords :
FrameDP
Littérature citée [8 références]
https://hal.inrae.fr/hal-02665259
Déposant : Migration Prodinra <>
Soumis le : dimanche 31 mai 2020 - 06:25:00
Dernière modification le : lundi 23 novembre 2020 - 15:00:07
Déposant : Migration Prodinra <>
Soumis le : dimanche 31 mai 2020 - 06:25:00
Dernière modification le : lundi 23 novembre 2020 - 15:00:07
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gouzy_framedDP_1.pdf
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Distributed under a Creative Commons Paternité - Pas d'utilisation commerciale 4.0 International License
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