Accéder directement au contenu Accéder directement à la navigation
Article dans une revue

Nuclear and plastidial SNP and INDEL markers for genetic tracking studies of Jacaranda copaia

Abstract : Nuclear and plastidial single nucleotide polymorphism (SNP) and INDEL markers were developed using restriction associated DNA sequencing (RADSeq) and low coverage MiSeq genome sequencing for population genetics and timber tracking purposes in the Neotropical timber species Jacaranda copaia. We used 407 nuclear SNPs, 29 chloroplast, and 31 mitochondrial loci to genotype 92 individuals from Brazil, Bolivia, French Guiana, and Peru. Based on high amplification rates and genetic differentiation among populations, 113 nuclear SNPs, 11 chloroplast, and 4 mitochondrial loci were selected, and their use validated for genetic tracking of timber origin.
Type de document :
Article dans une revue
Liste complète des métadonnées

https://hal.inrae.fr/hal-02619673
Déposant : Migration Prodinra <>
Soumis le : lundi 25 mai 2020 - 20:21:08
Dernière modification le : jeudi 25 février 2021 - 14:26:03

Identifiants

Collections

Citation

Alexandre M. Sebbenn, Celine Blanc-Jolivet, Malte Mader, Barbara R. V. Meyer-Sand, Kathelyn Paredes-Villanueva, et al.. Nuclear and plastidial SNP and INDEL markers for genetic tracking studies of Jacaranda copaia. Conservation Genetics Resources, Springer, 2019, 11 (3), pp.341-343. ⟨10.1007/s12686-019-01097-9⟩. ⟨hal-02619673⟩

Partager

Métriques

Consultations de la notice

43