BrAPI - an Application Programming Interface for Plant Breeding Applications.
2 IPK-Gatersleben - Leibniz Institute of Plant Genetics and Crop Plant Research [Gatersleben]
3 Boyce Thompson Institute [Ithaca]
4 CIP - International Potato Center = Centre International de la Pomme de terre
5 USDA-ARS : Agricultural Research Service
6 IRRI - International Rice Research Institute [Philippines]
7 Cirad - Centre de Coopération Internationale en Recherche Agronomique pour le Développement
8 URGI - Unité de Recherche Génomique Info
9 IBET - Instituto de Biologia Experimental e Tecnológica
10 WUR - Wageningen University and Research [Wageningen]
11 Cornell University [New York]
12 CGIAR
13 DArT P/L - Diversity Arrays Technology Pty Ltd
14 IRD - Institut de Recherche pour le Développement
15 LIRMM - Laboratoire d'Informatique de Robotique et de Microélectronique de Montpellier
16 University of Arizona
17 The James Hutton Institute
18 MISTEA - Mathématiques, Informatique et STatistique pour l'Environnement et l'Agronomie
19 John Innes Centre [Norwich]
20 ICRISAT - International Crops Research Institute for the Semi-Arid Tropics [Inde]
21 Kansas State University
- Fonction : Auteur
- Fonction : Auteur
- PersonId : 800880
- ORCID : 0000-0002-4368-8058
- Fonction : Auteur
- PersonId : 1494365
- ORCID : 0000-0002-8461-9745
- Fonction : Auteur
- PersonId : 753219
- IdHAL : pierre-larmande
- ORCID : 0000-0002-2923-9790
- IdRef : 122767802
- Fonction : Auteur
- Fonction : Auteur
- PersonId : 1171443
- ORCID : 0000-0003-4189-7793
- Fonction : Auteur
- PersonId : 745453
- IdHAL : cyril-pommier
- ORCID : 0000-0002-9040-8733
- Fonction : Auteur
- PersonId : 800063
- ORCID : 0000-0001-6887-4095
- Fonction : Auteur
- PersonId : 769134
- ORCID : 0000-0003-0284-1885
- Fonction : Auteur
- Fonction : Auteur
- Fonction : Auteur
Résumé
Motivation Modern genomic breeding methods rely heavily on very large amounts of phenotyping and genotyping data, presenting new challenges in effective data management and integration. Recently, the size and complexity of datasets have increased significantly, with the result that data is often stored on multiple systems. As analyses of interest increasingly require aggregation of datasets from diverse sources, data exchange between disparate systems becomes a challenge. Results To facilitate interoperability among breeding applications, we present the public plant Breeding Application Programming Interface (BrAPI). BrAPI is a standardized web service Application Programming Interface (API) specification. The development of BrAPI is a collaborative, community-based initiative involving a growing global community of over a hundred participants representing several dozen institutions and companies. Development of such a standard is recognized as critical to a number of important large breeding system initiatives as a foundational technology. Â The focus of the first version of the API is on providing services for connecting systems and retrieving basic breeding data including germplasm, study, observation, and marker data. A number of BrAPI-enabled applications, termed BrAPPs, have been written, that take advantage of the emerging support of BrAPI by many databases. Availability and Implementation More information on BrAPI, including links to the specification, test suites, BrAPPs, and sample implementations is available at https://brapi.org/. The BrAPI specification and the developer tools are provided as free and open source.
| Origine | Fichiers produits par l'(les) auteur(s) |
|---|---|
| Licence |
