TransPLANT resources for triticeae genomic data - INRAE - Institut national de recherche pour l’agriculture, l’alimentation et l’environnement Access content directly
Journal Articles PLANT GENOME Year : 2016

TransPLANT resources for triticeae genomic data

Dan M. Bolser
  • Function : Author
  • PersonId : 1071153
Erik Kimmel
  • Function : Author
  • PersonId : 1203744
Cyril Pommier
Hadi Quesneville


The genome sequences of many important Triticeae species, including bread wheat (Triticum aestivum L.) and barley (Hordeum vulgare L.), remained uncharacterized for a long time because their high repeat content, large sizes, and polyploidy. As a result of improvements in sequencing technologies and novel analyses strategies, several of these have recently been deciphered. These efforts have generated new insights into Triticeae biology and genome organization and have important implications for downstream usage by breeders, experimental biologists, and comparative genomicists. transPLANT ( is an EU-funded project aimed at constructing hardware, software, and data infrastructure for genome-scale research in the life sciences. Since the Triticeae data are intrinsically complex, heterogenous, and distributed, the transPLANT consortium has undertaken efforts to develop common data formats and tools that enable the exchange and integration of data from distributed resources. Here we present an overview of the individual Triticeae genome resources hosted by transPLANT partners, introduce the objectives of transPLANT, and outline common developments and interfaces supporting integrated data access.
Fichier principal
Vignette du fichier
tpg-9-1-plantgenome2015.06.0038_1.pdf (3.44 Mo) Télécharger le fichier
Origin : Files produced by the author(s)

Dates and versions

hal-02635899 , version 1 (27-05-2020)



Manuel Spannagl, Michael M. Alaux, Matthias Lange, Dan M. Bolser, Kai Christian Bader, et al.. TransPLANT resources for triticeae genomic data. PLANT GENOME, 2016, 9 (1), 13 p. ⟨10.3835/plantgenome2015.06.0038⟩. ⟨hal-02635899⟩
46 View
51 Download



Gmail Facebook X LinkedIn More