How genomics can help biodiversity conservation
Kathrin Theissinger
(1)
,
Carlos Fernandes
(2)
,
Giulio Formenti
(3)
,
Iliana Bista
(4)
,
Paul Berg
(5)
,
Christoph Bleidorn
(6)
,
Aureliano Bombarely
(7)
,
Angelica Crottini
(8)
,
Guido Gallo
(7)
,
José Godoy
(9)
,
Sissel Jentoft
(10)
,
Joanna Malukiewicz
,
Alice Mouton
(11)
,
Rebekah Oomen
,
Sadye Paez
,
Per Palsbøll
,
Christophe Pampoulie
,
María Ruiz-López
,
Simona Secomandi
,
Hannes Svardal
,
Constantina Theofanopoulou
,
Jan de Vries
,
Ann-Marie Waldvogel
,
Guojie Zhang
,
Erich Jarvis
,
Miklós Bálint
,
Claudio Ciofi
,
Robert Waterhouse
,
Camila Mazzoni
,
Jacob Höglund
,
Sargis Aghayan
,
Tyler Alioto
,
Isabel Almudi
,
Nadir Alvarez
,
Paulo Alves
,
Isabel Amorim Do Rosario
,
Agostinho Antunes
,
Paula Arribas
,
Petr Baldrian
,
Giorgio Bertorelle
,
Astrid Böhne
,
Andrea Bonisoli-Alquati
,
Ljudevit Boštjančić
,
Bastien Boussau
,
Catherine Breton
,
Elena Buzan
,
Paula Campos
,
Carlos Carreras
,
L. Filipe C. Castro
,
Luis Chueca
,
Fedor Čiampor
,
Elena Conti
,
Robert Cook-Deegan
,
Daniel Croll
,
Mónica Cunha
,
Frédéric Delsuc
,
Alice Dennis
,
Dimitar Dimitrov
,
Rui Faria
,
Adrien Favre
,
Olivier Fedrigo
,
Rosa Fernández
,
Gentile Francesco Ficetola
,
Jean-François Flot
,
Toni Gabaldón
,
Dolores Agius
,
Alice Giani
,
M. Thomas P. Gilbert
,
Tine Grebenc
,
Katerina Guschanski
,
Romain Guyot
,
Bernhard Hausdorf
,
Oliver Hawlitschek
,
Peter Heintzman
,
Berthold Heinze
,
Michael Hiller
,
Martin Husemann
,
Alessio Iannucci
,
Iker Irisarri
,
Kjetill Jakobsen
,
Peter Klinga
,
Agnieszka Kloch
,
Claudius Kratochwil
,
Henrik Kusche
,
Kara K.S. Layton
,
Jennifer Leonard
,
Emmanuelle Lerat
(12)
,
Gianni Liti
,
Tereza Manousaki
,
Tomas Marques-Bonet
,
Pável Matos-Maraví
,
Michael Matschiner
,
Florian Maumus
(13)
,
Ann Mc Cartney
,
Shai Meiri
,
José Melo-Ferreira
,
Ximo Mengual
,
Michael Monaghan
,
Matteo Montagna
,
Robert Mysłajek
,
Marco Neiber
,
Violaine Nicolas
,
Marta Novo
,
Petar Ozretić
,
Ferran Palero
,
Lucian Pârvulescu
,
Marta Pascual
,
Octávio Paulo
,
Martina Pavlek
,
Cinta Pegueroles
,
Loïc Pellissier
,
Graziano Pesole
,
Craig Primmer
,
Ana Riesgo
,
Lukas Rüber
,
Diego Rubolini
,
Daniele Salvi
,
Ole Seehausen
,
Matthias Seidel
,
Bruno Studer
,
Spyros Theodoridis
,
Marco Thines
,
Lara Urban
,
Anti Vasemägi
,
Adriana Vella
,
Noel Vella
,
Sonja Vernes
,
Cristiano Vernesi
,
David Vieites
,
Christopher Wheat
,
Gert Wörheide
,
Yannick Wurm
,
Gabrielle Zammit
1
LOEWE Centre for Translational Biodiversity Genomics (LOEWE-TBG)
2 cE3c - Centre for Ecology - Evolution and Environmental Changes
3 Rockefeller University [New York]
4 Naturalis Biodiversity Center [Leiden]
5 Universidade do Porto = University of Porto
6 SUB Göttingen - Göttingen State and University Library
7 UNIMI - Università degli Studi di Milano = University of Milan
8 CIBIO - Centro de Investigação em Biodiversidade e Recursos Genéticos [Vairao]
9 Universidad de Sevilla, CSIC, JA, 41092 Seville, Spain
10 OsloMet - Oslo Metropolitan University
11 Université de Liège
12 LBBE - Laboratoire de Biométrie et Biologie Evolutive - UMR 5558
13 URGI - Unité de Recherche Génomique Info
2 cE3c - Centre for Ecology - Evolution and Environmental Changes
3 Rockefeller University [New York]
4 Naturalis Biodiversity Center [Leiden]
5 Universidade do Porto = University of Porto
6 SUB Göttingen - Göttingen State and University Library
7 UNIMI - Università degli Studi di Milano = University of Milan
8 CIBIO - Centro de Investigação em Biodiversidade e Recursos Genéticos [Vairao]
9 Universidad de Sevilla, CSIC, JA, 41092 Seville, Spain
10 OsloMet - Oslo Metropolitan University
11 Université de Liège
12 LBBE - Laboratoire de Biométrie et Biologie Evolutive - UMR 5558
13 URGI - Unité de Recherche Génomique Info
Joanna Malukiewicz
- Function : Author
Rebekah Oomen
- Function : Author
Sadye Paez
- Function : Author
Per Palsbøll
- Function : Author
Christophe Pampoulie
- Function : Author
María Ruiz-López
- Function : Author
Simona Secomandi
- Function : Author
Hannes Svardal
- Function : Author
Constantina Theofanopoulou
- Function : Author
Jan de Vries
- Function : Author
Ann-Marie Waldvogel
- Function : Author
Guojie Zhang
- Function : Author
Erich Jarvis
- Function : Author
Miklós Bálint
- Function : Author
Claudio Ciofi
- Function : Author
Robert Waterhouse
- Function : Author
Camila Mazzoni
- Function : Author
Jacob Höglund
- Function : Author
Sargis Aghayan
- Function : Author
Tyler Alioto
- Function : Author
Isabel Almudi
- Function : Author
Nadir Alvarez
- Function : Author
- PersonId : 855577
Paulo Alves
- Function : Author
Isabel Amorim Do Rosario
- Function : Author
Agostinho Antunes
- Function : Author
Paula Arribas
- Function : Author
Petr Baldrian
- Function : Author
Giorgio Bertorelle
- Function : Author
Astrid Böhne
- Function : Author
Andrea Bonisoli-Alquati
- Function : Author
Ljudevit Boštjančić
- Function : Author
Bastien Boussau
- Function : Author
Catherine Breton
- Function : Author
Elena Buzan
- Function : Author
Paula Campos
- Function : Author
Carlos Carreras
- Function : Author
L. Filipe C. Castro
- Function : Author
Luis Chueca
- Function : Author
Fedor Čiampor
- Function : Author
Elena Conti
- Function : Author
Robert Cook-Deegan
- Function : Author
Daniel Croll
- Function : Author
Mónica Cunha
- Function : Author
Frédéric Delsuc
- Function : Author
Alice Dennis
- Function : Author
Dimitar Dimitrov
- Function : Author
Rui Faria
- Function : Author
Adrien Favre
- Function : Author
Olivier Fedrigo
- Function : Author
Rosa Fernández
- Function : Author
Gentile Francesco Ficetola
- Function : Author
Jean-François Flot
- Function : Author
Toni Gabaldón
- Function : Author
Dolores Agius
- Function : Author
Alice Giani
- Function : Author
M. Thomas P. Gilbert
- Function : Author
Tine Grebenc
- Function : Author
Katerina Guschanski
- Function : Author
Romain Guyot
- Function : Author
- PersonId : 801032
- IdHAL : romain-guyot
- ORCID : 0000-0002-7016-7485
- IdRef : 224213946
Bernhard Hausdorf
- Function : Author
Oliver Hawlitschek
- Function : Author
Peter Heintzman
- Function : Author
Berthold Heinze
- Function : Author
Michael Hiller
- Function : Author
Martin Husemann
- Function : Author
Alessio Iannucci
- Function : Author
Iker Irisarri
- Function : Author
Kjetill Jakobsen
- Function : Author
Peter Klinga
- Function : Author
Agnieszka Kloch
- Function : Author
Claudius Kratochwil
- Function : Author
Henrik Kusche
- Function : Author
Kara K.S. Layton
- Function : Author
Jennifer Leonard
- Function : Author
Emmanuelle Lerat
- Function : Author
- PersonId : 21696
- IdHAL : emmanuelle-lerat
- ORCID : 0000-0001-6757-8796
- IdRef : 069851107
Gianni Liti
- Function : Author
Tereza Manousaki
- Function : Author
Tomas Marques-Bonet
- Function : Author
Pável Matos-Maraví
- Function : Author
Michael Matschiner
- Function : Author
Florian Maumus
- Function : Author
- PersonId : 747511
- IdHAL : florian-maumus
- ORCID : 0000-0001-7325-0527
- IdRef : 187116962
Ann Mc Cartney
- Function : Author
Shai Meiri
- Function : Author
José Melo-Ferreira
- Function : Author
Ximo Mengual
- Function : Author
Michael Monaghan
- Function : Author
Matteo Montagna
- Function : Author
Robert Mysłajek
- Function : Author
Marco Neiber
- Function : Author
Violaine Nicolas
- Function : Author
Marta Novo
- Function : Author
Petar Ozretić
- Function : Author
Ferran Palero
- Function : Author
Lucian Pârvulescu
- Function : Author
Marta Pascual
- Function : Author
Octávio Paulo
- Function : Author
Martina Pavlek
- Function : Author
Cinta Pegueroles
- Function : Author
Loïc Pellissier
- Function : Author
Graziano Pesole
- Function : Author
Craig Primmer
- Function : Author
Ana Riesgo
- Function : Author
Lukas Rüber
- Function : Author
Diego Rubolini
- Function : Author
Daniele Salvi
- Function : Author
Ole Seehausen
- Function : Author
Matthias Seidel
- Function : Author
Bruno Studer
- Function : Author
Spyros Theodoridis
- Function : Author
Marco Thines
- Function : Author
Lara Urban
- Function : Author
Anti Vasemägi
- Function : Author
Adriana Vella
- Function : Author
Noel Vella
- Function : Author
Sonja Vernes
- Function : Author
Cristiano Vernesi
- Function : Author
David Vieites
- Function : Author
Christopher Wheat
- Function : Author
Gert Wörheide
- Function : Author
Yannick Wurm
- Function : Author
Gabrielle Zammit
- Function : Author
Abstract
The availability of public genomic resources can greatly assist biodiversity assessment, conservation, and restoration efforts by providing evidence for
scientifically informed management decisions. Here we survey the main approaches and applications in biodiversity and conservation genomics, considering
practical factors, such as cost, time, prerequisite skills, and current shortcomings of applications. Most approaches perform best in combination with reference
genomes from the target species or closely related species. We review case studies to illustrate how reference genomes can facilitate biodiversity research
and conservation across the tree of life. We conclude that the time is ripe to view reference genomes as fundamental resources and to integrate their use as a
best practice in conservation genomics.
Domains
Life Sciences [q-bio]
Fichier principal
How%20genomics%20can%20help%20biodiversity%20conservation%202023.pdf (1)
Télécharger le fichier
Origin | Publisher files allowed on an open archive |
---|---|
Licence |