Microscale dynamics of dark zone alterations in anthropized karstic cave shows abrupt microbial community switch - INRAE - Institut national de recherche pour l’agriculture, l’alimentation et l’environnement
Journal Articles Science of the Total Environment Year : 2023

Microscale dynamics of dark zone alterations in anthropized karstic cave shows abrupt microbial community switch

Abstract

Strong anthropization of karstic caves may result in formation of various wall alterations including dark zones, whose microbial community differs from that of non-altered surfaces nearby. Dark zones grow quickly and without gradual visual changes, leading to the hypothesis of a simple process rather than complex microbial successions, but this is counter-intuitive as underground microbial changes are typically slow and dark zones are microbiologically very dis-tinct from unmarked surfaces. We tested this hypothesis in Paleolithic Lascaux Cave, across two years of microscale sampling. Indeed, Illumina MiSeq metabarcoding evidenced only three community stages for bacteria, fungi and all microeukaryotes together (i.e. unmarked surfaces, newly-formed dark zones and intermediate/old dark zones) and just two stages for archaea (unmarked surfaces vs dark zones), indicating abrupt community changes. The onset of dark zone formation coincided with the development of Ochroconis fungi, Bacteroidota and the bacterial genera Labrys, Nonomuraea and Sphingomonas, in parallel to Pseudomonas counter-selection. Modeling of community assembly pro-cesses highlighted that the dynamics of rare taxa in unmarked surfaces adjacent to dark zones and in newly-formed dark zones were governed in part by deterministic processes. This suggests that cooperative relationships between these taxa might be important to promote dark zone formation. Taken together, these findings indicate an abrupt com-munity switch as these new alterations form on Lascaux cave walls.

Dates and versions

hal-04530252 , version 1 (03-04-2024)

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Zélia Bontemps, Mylène Hugoni, Yvan Moënne-Loccoz. Microscale dynamics of dark zone alterations in anthropized karstic cave shows abrupt microbial community switch. Science of the Total Environment, 2023, 862, pp.160824. ⟨10.1016/j.scitotenv.2022.160824⟩. ⟨hal-04530252⟩
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