GEO EXPORTER : a tools to automate publishing of microarray data to Gene Expression Omnibus
Résumé
current solutions do not allow automatic publication of microarray experiment results from a microarray data management system to one of the public repositories (Gene Expression Omnibus, ArrayExpress). The end-user is generally involved in various steps of the process which results in low productivity. We have developed a software which allows validating, extraction and automatic publication of microarray data stored in BASE (BioArray Software Environment), a wildly used open source microarray data management system, to Gene Expression Omnibus a reference microarray data repository. The code written in PHP is especially modularized to allow a quick adaptation to any microarray data management system which could be access by SQL.