 |
Journal articles
Shifting the limits in wheat research and breeding using a fully annotated reference genome
. International Wheat Genome Sequencing Consortium (iwgsc)
Arnaud Bellec
1
Helene Berges
1
Sonia Vautrin
1
Michael Alaux
2
Françoise Alfama
2
Anne-Francoise Adam-Blondon
2
Raphaël Flores
2
Claire Guerche
2
Thomas Letellier
2
Mikaël Loaec
2
Hadi Quesneville
2
Rudi Appels
3, *
Philippe Rigault
4
Frédéric Choulet
5
Ambre-Aurore Josselin
6
Francois Balfourier
5
Etienne Paux
5
Hélène Rimbert
5
Nicolas Guilhot
7
Philippe Leroy
5
Dominique Arnaud
8
Smahane Chalabi
8
Pierre Sourdille
5
Benoît Darrier
5
*
Corresponding author
Michael Alaux 2
Author
Françoise Alfama 2
Author
Anne-Francoise Adam-Blondon 2
Author IdHAL : anne-francoise-adam-blondon ResearcherId : http://orcid.org/0000-0002-3412-9086 ORCID : https://orcid.org/0000-0002-3412-9086
Raphaël Flores 2
Author IdHAL : raphael-gauthier-flores ORCID : https://orcid.org/0000-0002-0278-5441 IDP INRA : https://test.federation.renater.fr/idp/shibbolethrgflores
Claire Guerche 2
Author
Thomas Letellier 2
Author
Mikaël Loaec 2
Author
Hadi Quesneville 2
Author IdHAL : hadi-quesneville ORCID : https://orcid.org/0000-0003-3001-4908
Rudi Appels 3
Correspondent author
Philippe Rigault 4
Author
Frédéric Choulet 5
Author
Ambre-Aurore Josselin 6
Author
Francois Balfourier 5
Author
Etienne Paux 5
Author Employer institution : Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement IdHAL : etienne-paux ORCID : https://orcid.org/0000-0002-3094-7129
Hélène Rimbert 5
Author
Nicolas Guilhot 7
Author
Philippe Leroy 5
Author
Dominique Arnaud 8
Author
Smahane Chalabi 8
Author IdHAL : smahane-chalabi
Pierre Sourdille 5
Author
Benoît Darrier 5
Author
1
CNRGV - Centre National de Ressources Génomiques Végétales (France)
- INRA - Institut National de la Recherche Agronomique : UR1258 (France)
2
URGI - Unité de Recherche Génomique Info (INRA, Centre de recherche de Versailles, bat.18 Route de Saint Cyr 78000 Versailles - France)
- INRA - Institut National de la Recherche Agronomique : UR1164 (France)
3
CODIR - Collège de Direction (INRA Siège
147 rue de l'Université
75338 PARIS CEDEX 07 - France)
- INRA - Institut National de la Recherche Agronomique : UAR0233 (France)
4
Gydle Inc (Canada)
- Partenaires INRAE (Cette structure regroupe l'ensemble des structures créées pour la reprise des données ProdInra - France)
5
GDEC - Génétique Diversité et Ecophysiologie des Céréales (Site INRAE Crouël : 5, Chemin de Beaulieu, 63039 Clermont-Ferrand // Site Clermont : Campus Universitaire des Cézeaux, TSA 60026, 1 Impasse Amélie Murat, 63178 Aubière - France)
- INRA - Institut National de la Recherche Agronomique : UMR1095 (France)
- UBP - Université Blaise Pascal - Clermont-Ferrand 2 : UMR1095 (34, avenue Carnot - BP 185 / 63006 Clermont-Ferrand cedex - France)
6
IGEPP - Institut de Génétique, Environnement et Protection des Plantes (Domaine de la Motte au Vicomte BP 35327
35653 Le Rheu - France)
- INRA - Institut National de la Recherche Agronomique : UMR1349 (France)
- UR1 - Université de Rennes 1 : UMR1349 (2 rue du Thabor - CS 46510 - 35065 Rennes cedex - France)
- UNIV-RENNES - Université de Rennes (France)
- AGROCAMPUS OUEST : UMR1349 (Institut Supérieur des Sciences Agronomiques, Agroalimentaires, Horticoles et du Paysage - 65, rue de St Brieuc - CS 84215 - 35042 Rennes cedex - France)
8
IPS2 (UMR_9213 / UMR_1403) - Institut des Sciences des Plantes de Paris-Saclay (Institute of Plant Sciences - Paris-Saclay
Bâtiment 630, rue de Noetzlin
Plateau du Moulon
CS80004
91192 - Gif-sur-Yvette Cedex - France)
- INRA - Institut National de la Recherche Agronomique : UMR_1403 (France)
- UP11 - Université Paris-Sud - Paris 11 (Bâtiment 300 - 91405 Orsay cedex - France)
- UPD7 - Université Paris Diderot - Paris 7 (5 rue Thomas-Mann - 75205 Paris cedex 13 - France)
- UEVE - Université d'Évry-Val-d'Essonne (Boulevard François Mitterrand 91025 Evry Cedex - France)
- CNRS - Centre National de la Recherche Scientifique : UMR_9213 (France)
Abstract : An annotated reference sequence representing the hexaploid bread wheat genome in 21 pseudomolecules has been analyzed to identify the distribution and genomic context of coding and noncoding elements across the A, B, and D subgenomes. With an estimated coverage of 94% of the genome and containing 107,891 high-confidence gene models, this assembly enabled the discovery of tissue- and developmental stage-related coexpression networks by providing a transcriptome atlas representing major stages of wheat development. Dynamics of complex gene families involved in environmental adaptation and end-use quality were revealed at subgenome resolution and contextualized to known agronomic single-gene or quantitative trait loci. This community resource establishes the foundation for accelerating wheat research and application through improved understanding of wheat biology and genomics-assisted breeding.
Document type :
Journal articles
Domain :
Complete list of metadata
https://hal.archives-ouvertes.fr/hal-01885399
Contributor : Archive Ouverte Prodinra <>
Submitted on : Monday, October 1, 2018 - 8:05:01 PM
Last modification on : Thursday, April 22, 2021 - 3:14:02 PM
Contributor : Archive Ouverte Prodinra <>
Submitted on : Monday, October 1, 2018 - 8:05:01 PM
Last modification on : Thursday, April 22, 2021 - 3:14:02 PM
Links full text
Identifiers
- HAL Id : hal-01885399, version 1
- PUBMED : 30115783
- PRODINRA : 440643
- DOI : 10.1126/science.aar7191
- WOS : 000442818200032
Collections
UNIV-PARIS7 | INRA | UNAM | UNIV-RENNES1 | USPC | GDEC | PRES_CLERMONT | BIOSIT | UR1-UFR-SVE | UNIV-RENNES | CNRS | UNIV-EVRY | IPS2 | INRAE | UNIV-PARIS | UP-SCIENCES
Citation
. International Wheat Genome Sequencing Consortium (iwgsc), Arnaud Bellec, Helene Berges, Sonia Vautrin, Michael Alaux, et al.. Shifting the limits in wheat research and breeding using a fully annotated reference genome. Science, American Association for the Advancement of Science, 2018, 361 (6403), pp.7191. ⟨10.1126/science.aar7191⟩. ⟨hal-01885399⟩
Metrics
Record views
Personal data
Terms and conditions