BrAPI - an Application Programming Interface for Plant Breeding Applications.
Rafael Abbeloos
(1)
,
Jan Erik Backlund
(2)
,
Martin Basterrechea Salido
(3)
,
Guillaume Bauchet
(4)
,
Omar Benites-Alfaro
(5)
,
Clay Birkett
(6)
,
Viana C Calaminos
(7)
,
Pierre Carceller
(8)
,
Guillaume Cornut
(9)
,
Bruno Vasques Costa
(10)
,
Jeremy D Edwards
(6)
,
Richard Finkers
(11)
,
Star Yanxin Gao
(12)
,
Mehmood Ghaffar
(3)
,
Philip Glaser
(12)
,
Valentin Guignon
(13)
,
Puthick Hok
(14)
,
Andrzej Kilian
(14)
,
Patrick König
(3)
,
Jack Elendil B Lagare
(7)
,
Matthias Lange
(3)
,
Marie-Angélique Laporte
(13)
,
Pierre Larmande
(15)
,
David Lebauer
(16)
,
David Lyon
(4)
,
David Marshall
(17)
,
Dave Matthews
(6)
,
Iain Milne
(17)
,
Naymesh Mistry
(18)
,
Nicolas Morales
(4)
,
Lukas Mueller
(4)
,
Pascal Neveu
(19)
,
Evangelia Papoutsoglou
(11)
,
Brian Pearce
(14)
,
Ivan Perez-Masias
(5)
,
Cyril Pommier
(9)
,
Ricardo H Ramirez-Gonzalez
(20)
,
Abhishek Rathore
(21)
,
Angel M Raque
(7)
,
Sebastian Raubach
(17)
,
Trevor Rife
(22)
,
Kelly Robbins
(12)
,
Mathieu Rouard
(3)
,
Chaitanya Sarma
(21)
,
Uwe Scholz
(3)
,
Peter Selby
(12)
,
Guilhem Sempere
(8)
,
Paul Shaw
(17)
,
Reinhard Simon
,
Nahuel Soldevilla
(23)
,
Gordon Stephen
(17)
,
Qi Sun
(12)
,
Clarysabel Tovar
(23)
,
Grzegorz Uszynski
(14)
,
Maikel Verouden
(11, 24)
1
Flanders Institute for Biotechnology
2 VIB [Belgium]
3 IPK-Gatersleben - Leibniz Institute of Plant Genetics and Crop Plant Research [Gatersleben]
4 Boyce Thompson Institute [Ithaca]
5 International Potato Center
6 USDA-ARS : Agricultural Research Service
7 IRRI - International Rice Research Institute [Philippines]
8 Cirad - Centre de Coopération Internationale en Recherche Agronomique pour le Développement
9 URGI - Unité de Recherche Génomique Info
10 IBET - Instituto de Biologia Experimental e Tecnológica
11 WUR - Wageningen University and Research Centre
12 Cornell University [New York]
13 CGIAR
14 DArT P/L - Diversity Arrays Technology Pty Ltd
15 IRD - Institut de Recherche pour le Développement
16 University of Arizona
17 The James Hutton Institute
18 LeafNode Technology
19 MISTEA - Mathématiques, Informatique et STatistique pour l'Environnement et l'Agronomie
20 John Innes Centre [Norwich]
21 ICRISAT - International Crops Research Institute for the Semi-Arid Tropics [Inde]
22 Kansas State University
23 Leafnode Technolog
24 Biometris
2 VIB [Belgium]
3 IPK-Gatersleben - Leibniz Institute of Plant Genetics and Crop Plant Research [Gatersleben]
4 Boyce Thompson Institute [Ithaca]
5 International Potato Center
6 USDA-ARS : Agricultural Research Service
7 IRRI - International Rice Research Institute [Philippines]
8 Cirad - Centre de Coopération Internationale en Recherche Agronomique pour le Développement
9 URGI - Unité de Recherche Génomique Info
10 IBET - Instituto de Biologia Experimental e Tecnológica
11 WUR - Wageningen University and Research Centre
12 Cornell University [New York]
13 CGIAR
14 DArT P/L - Diversity Arrays Technology Pty Ltd
15 IRD - Institut de Recherche pour le Développement
16 University of Arizona
17 The James Hutton Institute
18 LeafNode Technology
19 MISTEA - Mathématiques, Informatique et STatistique pour l'Environnement et l'Agronomie
20 John Innes Centre [Norwich]
21 ICRISAT - International Crops Research Institute for the Semi-Arid Tropics [Inde]
22 Kansas State University
23 Leafnode Technolog
24 Biometris
Richard Finkers
- Fonction : Auteur
- PersonId : 800880
- ORCID : 0000-0002-4368-8058
Pierre Larmande
- Fonction : Auteur
- PersonId : 753219
- IdHAL : pierre-larmande
- ORCID : 0000-0002-2923-9790
- IdRef : 122767802
Pascal Neveu
- Fonction : Auteur
- PersonId : 1171443
- ORCID : 0000-0003-4189-7793
Cyril Pommier
- Fonction : Auteur
- PersonId : 745453
- IdHAL : cyril-pommier
- ORCID : 0000-0002-9040-8733
Abhishek Rathore
- Fonction : Auteur
- PersonId : 800063
- ORCID : 0000-0001-6887-4095
Mathieu Rouard
- Fonction : Auteur
- PersonId : 769134
- ORCID : 0000-0003-0284-1885
Reinhard Simon
- Fonction : Auteur
Résumé
Motivation
Modern genomic breeding methods rely heavily on very large amounts of phenotyping and genotyping data, presenting new challenges in effective data management and integration. Recently, the size and complexity of datasets have increased significantly, with the result that data is often stored on multiple systems. As analyses of interest increasingly require aggregation of datasets from diverse sources, data exchange between disparate systems becomes a challenge.
Results
To facilitate interoperability among breeding applications, we present the public plant Breeding Application Programming Interface (BrAPI). BrAPI is a standardized web service Application Programming Interface (API) specification. The development of BrAPI is a collaborative, community-based initiative involving a growing global community of over a hundred participants representing several dozen institutions and companies. Development of such a standard is recognized as critical to a number of important large breeding system initiatives as a foundational technology. Â The focus of the first version of the API is on providing services for connecting systems and retrieving basic breeding data including germplasm, study, observation, and marker data. A number of BrAPI-enabled applications, termed BrAPPs, have been written, that take advantage of the emerging support of BrAPI by many databases.
Availability and Implementation
More information on BrAPI, including links to the specification, test suites, BrAPPs, and sample implementations is available at https://brapi.org/. The BrAPI specification and the developer tools are provided as free and open source.
Origine | Fichiers produits par l'(les) auteur(s) |
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