Bayesian inference of natural selection from spatiotemporal phenotypic data - INRAE - Institut national de recherche pour l’agriculture, l’alimentation et l’environnement Accéder directement au contenu
Article Dans Une Revue Theoretical Population Biology Année : 2020

Bayesian inference of natural selection from spatiotemporal phenotypic data

Résumé

Spatiotemporal variations of natural selection may influence the evolution of various features of organisms such as local adaptation or specialisation. This article develops a method for inferring how selection varies between locations and between generations from phenotypic data. It is assumed that generations are non-overlapping and that individuals reproduce by selfing or asexually. A quantitative genetics model taking account of the effects of stabilising natural selection, the environment and mutation on phenotypic means and variances is developed. Explicit results on the evolution of populations are derived and used to develop a Bayesian inference method. The latter is applied to simulated data and to data from a wheat participatory plant breeding programme. It has some ability to infer evolutionary parameters, but estimates may be sensitive to prior distributions, for example when phenotypic time series are short and when environmental effects are large. In such cases, sensitivity to prior distributions may be reported or more data may be collected.
Fichier principal
Vignette du fichier
20190901selection.pdf (326.09 Ko) Télécharger le fichier
20190901SI.pdf (272.8 Ko) Télécharger le fichier
Origine : Fichiers produits par l'(les) auteur(s)

Dates et versions

hal-03641603 , version 1 (14-04-2022)

Licence

Paternité - Pas d'utilisation commerciale - Pas de modification

Identifiants

Citer

Olivier David, Gaëlle van Frank, Isabelle Goldringer, Pierre Rivière, Michel Turbet Delof. Bayesian inference of natural selection from spatiotemporal phenotypic data. Theoretical Population Biology, 2020, 131, pp.100-109. ⟨10.1016/j.tpb.2019.11.007⟩. ⟨hal-03641603⟩
105 Consultations
228 Téléchargements

Altmetric

Partager

Gmail Facebook X LinkedIn More