WTO, an ontology for wheat traits and phenotypes in scientific publications - INRAE - Institut national de recherche pour l’agriculture, l’alimentation et l’environnement Access content directly
Journal Articles Genomics & Informatics Year : 2020

WTO, an ontology for wheat traits and phenotypes in scientific publications

Abstract

Phenotyping is a major issue for wheat agriculture to meet the challenges of adaptation of wheat varieties to climate change and chemical input reduction in crop. The need to improve the reuse of observations and experimental data has led to the creation of reference ontologies to standardize descriptions of phenotypes and to facilitate their comparison. The scientific literature is largely under-exploited, although extremely rich in phenotype descriptions associated with cultivars and genetic information. In this paper we propose the Wheat Trait Ontology (WTO) that is suitable for the extraction and management of scientific information from scientific papers, and its combination with data from genomic and experimental databases. We describe the principles of WTO construction and show examples of WTO use for the extraction and management of phenotype descriptions obtained from scientific documents.
Fichier principal
Vignette du fichier
2020_Nédellec_G&I.pdf (2.42 Mo) Télécharger le fichier
Origin : Publisher files allowed on an open archive

Dates and versions

hal-02886745 , version 1 (07-06-2021)

Licence

Attribution

Identifiers

Cite

Claire Nédellec, Liliana Ibanescu, Robert Bossy, Pierre Sourdille. WTO, an ontology for wheat traits and phenotypes in scientific publications. Genomics & Informatics, 2020, 18 (2), ⟨10.5808/GI.2020.18.2.e14⟩. ⟨hal-02886745⟩
155 View
30 Download

Altmetric

Share

Gmail Facebook X LinkedIn More