Sequencing the genome of the French wheat variety Renan - INRAE - Institut national de recherche pour l’agriculture, l’alimentation et l’environnement Accéder directement au contenu
Communication Dans Un Congrès Année : 2022

Sequencing the genome of the French wheat variety Renan

Résumé

We sequenced the genome of the French bread wheat cultivar Renan, one of the most used varieties for organic farming. A set of 3M reads larger than 50kb were obtained, representing a 14x depth of coverage, using Oxford Nanopore Technology. Combined with Illumina reads, Bionano maps, and HiC data, we assembled 21 chromosome pseudomolecules. To advance towards building a wheat pangenome, we optimized the procedures of gene annotation so that the genes predicted in the reference cultivar Chinese Spring were mapped accurately along the Renan chromosomes using MAGATT pipeline. Results about the Renan genome assembly, annotation, and comparison with the other available wheat genomes will be presented. Considerations about wheat pangenomics will be discussed.
Fichier principal
Vignette du fichier
2022_09_29_IWGSC_webinar_Renan.pdf (3.62 Mo) Télécharger le fichier
Origine : Fichiers produits par l'(les) auteur(s)
Licence : CC BY SA - Paternité - Partage selon les Conditions Initiales

Dates et versions

hal-04090088 , version 1 (05-05-2023)

Licence

Paternité - Partage selon les Conditions Initiales

Identifiants

  • HAL Id : hal-04090088 , version 1

Citer

Frédéric Choulet. Sequencing the genome of the French wheat variety Renan. IWGSC Webinar, IWGSC - International Wheat Genome Sequencing Consortium, Sep 2022, Clermont-Ferrand, France. ⟨hal-04090088⟩
8 Consultations
5 Téléchargements

Partager

Gmail Facebook X LinkedIn More