Sequencing the genome of the French wheat variety Renan
Résumé
We sequenced the genome of the French bread wheat cultivar Renan, one of the most used varieties for organic farming.
A set of 3M reads larger than 50kb were obtained, representing a 14x depth of coverage, using Oxford Nanopore
Technology. Combined with Illumina reads, Bionano maps, and HiC data, we assembled 21 chromosome pseudomolecules.
To advance towards building a wheat pangenome, we optimized the procedures of gene annotation so that the genes
predicted in the reference cultivar Chinese Spring were mapped accurately along the Renan chromosomes using MAGATT
pipeline. Results about the Renan genome assembly, annotation, and comparison with the other available wheat genomes
will be presented. Considerations about wheat pangenomics will be discussed.
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